2008

Andersen, SU, Buechel, S, Zhao, Z, Ljung, K, Novak, O, Busch, W, Schuster, C, and Lohmann, JU (2008).
Requirement of B2-type cyclin-dependent kinases for meristem integrity in Arabidopsis thaliana.
Plant Cell, 20(1):88-100.

Brux, A, Liu, T, Krebs, M, Stierhof, Y, Lohmann, JU, Miersch, O, Wasternack, C, and Schumacher, K (2008).
Reduced V-ATPase activity in the trans-Golgi network causes oxylipin-dependent hypocotyl growth Inhibition in Arabidopsis.
Plant Cell, 20(4):1088-100.

de Felippes, FF, Schneeberger, K, Dezulian, T, Huson, DH, and Weigel, D (2008).
Evolution of Arabidopsis thaliana microRNAs from random sequences.
RNA, 14(12):2455-9.

Dohmann, EMN, Levesque, MP, De Veylder, L, Reichardt, I, Jurgens, G, Schmid, M, and Schwechheimer, C (2008).
The Arabidopsis COP9 signalosome is essential for G2 phase progression and genomic stability.
Development, 135(11):2013-22.

Dohmann, EMN, Levesque, MP, Isono, E, Schmid, M, and Schwechheimer, C (2008).
Auxin responses in mutants of the Arabidopsis CONSTITUTIVE PHOTOMORPHOGENIC9 signalosome.
Plant Physiol, 147(3):1369-79.

Filiault, DL, Wessinger, CA, Dinneny, JR, Lutes, J, Borevitz, JO, Weigel, D, Chory, J, and Maloof, JN (2008).
Amino acid polymorphisms in Arabidopsis phytochrome B cause differential responses to light.
Proc Natl Acad Sci U S A, 105(8):3157-62.

Geier, F, Lohmann, JU, Gerstung, M, Maier, AT, Timmer, J, and Fleck, C (2008).
A quantitative and dynamic model for plant stem cell regulation.
PLoS ONE, 3(10):e3553.

Hanikenne, M, Talke, IN, Haydon, MJ, Lanz, C, Nolte, A, Motte, P, Kroymann, J, Weigel, D, and Kramer, U (2008).
Evolution of metal hyperaccumulation required cis-regulatory changes and triplication of HMA4.
Nature, 453(7193):391-5.

Helm, M, Schmid, M, Hierl, G, Terneus, K, Tan, L, Lottspeich, F, Kieliszewski, MJ, and Gietl, C (2008).
KDEL-tailed cysteine endopeptidases involved in programmed cell death, intercalation of new cells, and dismantling of extensin scaffolds
Am J Bot, 95(9):1049-1062.

Jones, AM, Chory, J, Dangl, JL, Estelle, M, Jacobsen, SE, Meyerowitz, EM, Nordborg, M, and Weigel, D (2008).
The impact of Arabidopsis on human health: diversifying our portfolio.
Cell, 133(6):939-43.

Laubinger, S, Sachsenberg, T, Zeller, G, Busch, W, Lohmann, JU, Ratsch, G, and Weigel, D (2008).
Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana.
Proc Natl Acad Sci U S A, 105(25):8795-800.

Laubinger, S, Zeller, G, Henz, SR, Sachsenberg, T, Widmer, CK, Naouar, N, Vuylsteke, M, Scholkopf, B, Ratsch, G, and Weigel, D (2008).
At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana.
Genome Biol, 9(7):R112.

Loudet, O, Michael, TP, Burger, BT, Le Mette, C, Mockler, TC, Weigel, D, and Chory, J (2008).
A zinc knuckle protein that negatively controls morning-specific growth in Arabidopsis thaliana.
Proc Natl Acad Sci U S A, 105(44):17193-8.

Meyers, BC, Axtell, MJ, Bartel, B, Bartel, DP, Baulcombe, D, Bowman, JL, Cao, X, Carrington, JC, Chen, X, Green, PJ, Griffiths-Jones, S, Jacobsen, SE, Mallory, AC, Martienssen, RA, Poethig, RS, Qi, Y, Vaucheret, H, Voinnet, O, Watanabe, Y, Weigel, D, and Zhu, J (2008).
Criteria for annotation of plant MicroRNAs.
Plant Cell, 20(12):3186-90.

Nolte, V, Weigel, D, and Schlotterer, C (2008).
The impact of shared ancestral variation on hybrid male lethality--a 16 codon indel in the Drosophila simulans Lhr gene.
J Evol Biol, 21(2):551-5.

Nordborg, M and Weigel, D (2008).
Next-generation genetics in plants.
Nature, 456(7223):720-3.

Ossowski, S, Schneeberger, K, Clark, RM, Lanz, C, Warthmann, N, and Weigel, D (2008).
Sequencing of natural strains of Arabidopsis thaliana with short reads.
Genome Res, 18(12):2024-33.

Ossowski, S, Schwab, R, and Weigel, D (2008).
Gene silencing in plants using artificial microRNAs and other small RNAs.
Plant J, 53(4):674-90.

Schommer, C, Palatnik, JF, Aggarwal, P, Chetelat, A, Cubas, P, Farmer, EE, Nath, U, and Weigel, D (2008).
Control of jasmonate biosynthesis and senescence by miR319 targets.
PLoS Biol, 6(9):e230.

Skirycz, A, Radziejwoski, A, Busch, W, Hannah, MA, Czeszejko, J, Kwasniewski, M, Zanor, M, Lohmann, JU, De Veylder, L, Witt, I, and Mueller-Roeber, B (2008).
The DOF transcription factor OBP1 is involved in cell cycle regulation in Arabidopsis thaliana.
Plant J, 56(5):779-92.

Wang, J, Schwab, R, Czech, B, Mica, E, and Weigel, D (2008).
Dual effects of miR156-targeted SPL genes and CYP78A5/KLUH on plastochron length and organ size in Arabidopsis thaliana.
Plant Cell, 20(5):1231-43.

Warthmann, N, Chen, H, Ossowski, S, Weigel, D, and Herve, P (2008).
Highly specific gene silencing by artificial miRNAs in rice.
PLoS ONE, 3(3):e1829.

Warthmann, N, Das, S, Lanz, C, and Weigel, D (2008).
Comparative analysis of the MIR319a microRNA locus in Arabidopsis and related Brassicaceae.
Mol Biol Evol, 25(5):892-902.

Zeller, G, Clark, RM, Schneeberger, K, Bohlen, A, Weigel, D, and Ratsch, G (2008).
Detecting polymorphic regions in Arabidopsis thaliana with resequencing microarrays.
Genome Res, 18(6):918-29.

Zeller, G, Henz, SR, Laubinger, S, Weigel, D, and Ratsch, G (2008).
Transcript normalization and segmentation of tiling array data.
Pac Symp Biocomput:527-38.

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